Most of the algae is turning green now which I am very happy about but the piece with the bubbles has gotten a little worse and seems to have some pieces stringing now. Not sure if its the stuff your talking about but do you think I should actively treat for it. I already have carbon in my filter and I am currently raising a low ph.
I would siphon it out during water changes. With the measures you are already taking, water changes and the tank maturing some it should disappear for you I would think.