I think this might just be a preference between, no control and some control. I personally wanted to go the chem free route, and kinda wanted a little eco system like is really in the oceans. But I even like the micro algae in my tank when others do not. I also love all the little pineapple sponges there's a little grove of them now, and tube worms. I kept my rock wet and never saw a true "cycle" as far as an Ne spike and all that. Granted I am not sure this would work the same with a huge tank (I have only a 35g w/ no sump). I totaly see why people start "clean" but I can't see myself doing that. Like I said I think it is more of a preference of how much control over things you want.
-Heidi
PS I am far from an expert I only just took the plunge in November, so I could change MO in a could years down the road.