Thank you kindly for the feedback, I really appreciate it. I'm not so concerned about the flush kit really scrubbing the membrane as I am just using it to push the old water out of the system and if it takes some of the build up off of the membrane too, then that's cool with me.
As for the TDS meter I have the dual in-line one, a single in-line, & a handheld. A little redundant, yes, but I like to measure for accuracy.
I have considered changing out the flow restricter to a capillary tube restrictor, however, I will try your test first to see what my waste / good water ratio is (thank you for the suggestion). These are relatively cheap upgrades to the unit so i'm not too concerned there. I just want to make sure things are consistant from the source.